SEAVIEW SURVEY

SCIENTIFIC
OUTPUTS

 

TO DATE:
50 scientific papers & reports, 33 CONFERENCE ABSTRACTS & research presentations, 8 SCIENTIFIC ARTICLES
& 1 book

SCIENTIFIC

PAPERS & REPORTS

Cyclone damage at mesophotic depths on Myrmidon Reef (GBR) Bongaerts P, Muir P, Englebert N, Bridge TCL, Hoegh-Guildberg O, coral Reefs, 2013, DOI 10.1007/s00338-013-1052-y

Deep impact: The shallow reefs of the Great Barrier Reef are under stress, with a recent report estimating that half of the coral cover has been lost within the past three decades. However, scientists are now discovering healthy coral communities lying in deeper waters adjacent to these disturbed areas. Could these deep reefs hold the key to the survival of the Great Barrier Reef? Christopher Doyle, Australasian Science, 2013, DOI 1442-679X

The Catlin Seaview Survey – kilometre‐scale seascape assessment, and monitoring of coral reef ecosystems Gonzalez-Rivero M, Bongaerts P, Beijbom O, Pizarro O, et al, Aquatic Conservation: Marine and Freshwater Ecosystems, 2014, DOI 10.1002/aqc.2505

Quantification in the wild: data-sets and baselines Beijbom O, Hoffman J, Yao, E, Darrell T, et al, arXiv.org, 2015, arXiv:1510.04811

Prevalent endosymbiont zonation shapes the depth distributions of scleractinian coral species Bongaerts P, Carmichael M, Hay KB, Tonk L, Frade PR, Hoegh-Guldberg O, Royal Society Open Science, 2015, DOI 10.1098/rsos.140297

Deep down on a Caribbean Reef: lower mesophotic depths harbor a specialized coral-endosymbiont community Bongaerts P, Frade PR, Hay KB, Englebert N, et al, Scientific Reports, 2015, DOI 10.1038/srep07652

Deepest zooxanthellate corals of the Great Barrier Reef and Coral Sea Englebert N, Bongaerts P, Muir P, Hay KB, Hoegh-Guldberg O, Marine Biodiversity, 2015, DOI 10.1007/s12526-014-0221-8

Scaling up Ecological Measurements of Coral Reefs Using Semi-Automated Field Image Collection and Analysis Gonzalez-Rivero M, Beijbom O, Rodriguez-Ramirez A, Holtrop T, et al, Remote Sensing for Coral Reef Monitoring, 2015, DOI 10.3390/rs8010030,

A quick, easy and non-intrusive method for underwater volume and surface area evaluation of benthic organisms by 3D computer modelling Lavy A, Eyal G, Neal B, Keren R, Loya Y, Ilan M, Methods in Ecology and Evolution, 2015, DOI 10.1111/2041-210X.12331

Diverse Staghorn Coral Fauna on the Mesophotic Reefs of North East Australia Muir P, Wallace C, Bridge TCL, Bongaerts P, PLoS One, 2015, DOI 10.1371/journal.pone.0117933

Drivers of lionfish spatial distribution in shallow' fore reef environments in the Caribbean Ricardo Kiyoshi Sepúlveda Hirose, 2015 (MSc Thesis)

Methods and measurement variance for field estimations of coral colony planar area using underwater photographs and semi-automated image segmentation Neal BP, Lin TH, Winter R, Treibitz T, Beijbom O, et al, Environmental Monitoring and Assessment, 2015, DOI 10.1007/s10661-015-4690-4

Habitat specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix Pantos O, Bongaerts P, Dennis PG, Tyson GW, Hoegh-Guldberg O, The ISME Journal, 2015, DOI 10.1038/ismej.2015.3

Understanding the impact of the cyclone Ita on coral reefs of the Great Barrier Reef: novel approaches for broad scale underwater surveys Yeray González Marrero, The University of Queensland, 2015, DOI 10.13140/RG.2.1.2891.4409 (Masters Thesis - UQ EMBC)

Improving Automated Annotation of Benthic Survey Images Using Wide-band Fluorescence Beijbom O, Treibitz Tali, Kline DI, Eyal G, Khen A, et al, Scientific Reports, 2016, DOI 10.1038/srep23166

Quantifying Multiscale Habitat Structural Complexity: A Cost-Effective Framework for Underwater 3D Modelling Ferrari Legorreta R, McKinnon D, Hu H, Smith R, Remote Sensing, 2016, DOI 10.3390/rs8020113,

Deep reefs are not universal refuges: Reseeding potential varies among coral species Bongaerts P, Riginos C, Brunner R, Englebert N, Smith SR, Hoegh-Guldberg O, Science Advances, 2017, DOI 10.1126/sciadv.1602373

Human activities influence benthic community structure and the composition of the coral-algal interactions in the central Maldives Brown KT, Bender-Champ D, Bryant DEP, Dove S, Hoegh-Guldberg O, Journal of Experimental Marine Biology and Ecology, 2017, DOI 10.1016/j.jembe.2017.09.006

Comparison of two photographic methodologies for collecting and analyzing the condition of coral reef ecosystems Bryant DEP, Rodriguez-Ramirez A, González‐Rivero M, Phinn S, Brown KT, Neal B, Hoegh-Guldberg O, Dove S, Ecosphere, 2017, DOI 10.1002/ecs2.1971

Lower Mesophotic Coral Communities (60-125 m Depth) of the Northern Great Barrier Reef and Coral Sea Englebert N, Bongaerts P, Muir P, Hay KB, Pichon M, Hoegh-Guldberg O, PLoS One, 2017, DOI 10.1371/journal.pone.0170336

Microbiome variation in corals with distinct depth distribution ranges across a shallow-mesophotic gradient (15-85 m) Glasl B, Bongaerts P, Elisabeth NH, Hoegh-Guldberg O, Herndl GJ, Frade, Coral Reefs, 2017, DOI 10.1007/s00338-016-1517-x

Linking fishes to multiple metrics of coral reef structural complexity using three-dimensional technology González-Rivero M, Harborne AR, Herrera-Reveles A, Bozed YM, Friedman A, Rogers A, Ganase A, Hoegh-Guldberg O, Scientific Reports, 2017, DOI 10.1038/s41598-017-14272-5

An evaluation of semi-automated methods for collecting ecosystem-level data in temperate marine systems Griffin K, Hedge LH, González-Rivero M, Hoegh-Guldberg O, Johnston EL, Ecol Evol, 2017, DOI 10.1002/ece3.3041

The Microbial Signature Provides Insight into the Mechanistic Basis of Coral Success across Reef Habitats Hernandez-Agreda A, Leggat W, Bongaerts P, Ainsworth TD, American Society for Microbiology, 2017, DOI 10.1128/mBio.00560-16

Gradients in primary production predict trophic strategies of mixotrophic corals across spatial scales Fox MD, Williams GJ, Johnson MD, Radice VZ, et al. Current Biology, 2018, DOI 10.1016/j.cub.2018.08.057

Deep reefs of the Great Barrier Reef offer limited thermal refuge during mass coral bleaching Frade PR, Bongaerts P, Englebert N, Rogers A, Gonzalez-Rivero M, Hoegh-Guldberg O, Nature Communications, 2018, DOI 10.1038/s41467-018-05741-0

Seaview Survey: GBR Training and Validation Dataset Gonzalez-Rivero M, Rodriguez-Ramirez A, Hoegh-Guldberg O, University of Queensland, 2018, DOI 10.14264/uql.2018.518

Rethinking the Coral Microbiome: Simplicity exists within a diverse microbial biosphere Hernandez A, Leggat W, Bongaerts P, Herrera C, Ainsworth TD, American Society for Microbiology, 2018, DOI 10.1128/mBio.00812-18

Acropora tenella, a zooxanthellate coral extending to 110-m depth in the northern Coral Sea Muir PR, Pichon M, Squire Jnr L, Wallace CC, Marine Biodiversity, 2018, DOI 10.1007/s12526-018-0855-z

High species richness and lineage diversity of reef corals in the mesophotic zone Muir PR, Wallace CC, Pichon M, Bongaerts P, Proceedings Royal Society B, 2018, DOI 10.1098/rspb.2018.1987

Using virtual reality to estimate aesthetic values of coral reefs Vercelloni J, Clifford S, Caley MJ, Pearse AR, et al, Royal Society Open Science, 2018, DOI 10.1098/rsos.172226

The dynamics of coral-algal interactions in space and time on the southern Great Barrier Reef Brown K, Bender-Champ D, Kubicek A, Van Der Zande R, Achlatis M, Hoegh-Guldberg O, Dove SG, Frontiers in Marine Science, 2018, DOI 10.3389/fmars.2018.00181

Temporal effects of ocean warming and acidification on coral–algal competition Brown K, Bender-Champ D, Kenyon T, Remond C, Hoegh-Guldberg O, Dove S, Coral Reefs, 2019, DOI 10.1007/s00338-019-01775-y

Status and trends of reef fish and benthic assemblages of the far northern Great Barrier Reef Emslie MJ, Cappo M, Currey-Randall L, Gonzalez-Rivero M, et al, Australian Institute of Marine Science, 2019

Seaview Survey photo-quadrat and image classification dataset Gonzalez-Rivero M, Rodriguez-Ramirez A, Beijbom O, et al, University of Queensland, 2019, DOI 10.14264/uql.2019.930

Evaluating coral trophic strategies using fatty acid composition and indices Radice VZ, Brett MT, Fry B, Fox MD, Hoegh-Guldberg O, Dove SG, PLoS One, 2019, DOI 10.1371/journal.pone.0222327

Upwelling as the major source of nitrogen for shallow and deep reef‐building corals across an oceanic atoll system Radice VZ, Hoegh-Guldberg O, Fry B, Fox MD, Dove SG, Functional Ecology, 2019, DOI 10.1111/1365-2435.13314

The distribution and abundance of coral at kilometre scales in response to local versus global disturbances in the Central Indian Ocean Dominic Bryant, The University of Queensland, 2019, DOI 10.14264/uql.2019.181 (PhD Thesis)

Trophic ecology of shallow and deep reef-building corals Veronica Radice, The University of Queensland, School of Biological Sciences, 2019, DOI 10.14264/uql.2019.367 (PhD Thesis)

Evaluating coral trophic strategies using fatty acid composition and indices Radice VZ, Brett MT, Fry B, Fox MD, Hoegh-Guldberg O, Dove SG, PLoS One, 2019, DOI 10.1371/journal.pone.0222327

Monitoring of Coral Reefs Using Artificial Intelligence: A Feasible and Cost-Effective Approach Gonzalez-Rivero M, Beijbom O, Rodriguez-Ramirez A, Bryant DEP, Ganase A, et al, Remote Sensing, 2020, DOI 10.3390/rs12030489

Monitoring through many eyes: Integrating disparate datasets to improve monitoring of the Great Barrier Reef Peterson EE, Santos-Fernandez E, Chen C, Clifford S, Vercelloni J, Pearse A, et al, Environmental Modelling & Software, 2020, DOI 10.1016/j.envsoft.2019.104557

Forecasting intensifying disturbance effects on coral reefs Vercelloni J, Liquet B, Kennedy E, Gonzalez-Rivero M, Caley J, Peterson EE, et al, Global Change Biology, 2020, DOI 10.1111/gcb.15059

Patterns of coral reef assemblages across the Great Barrier Reef Tadzio Holtrop (Master Thesis, University of Amsterdam)

Monitoring coral reefs within the Reef 2050 Integrated Monitoring and Reporting Program: final report of the coral reef expert group Schaffelke B, Anthony K, Babcock R, Bridge T, Carlos E, Diaz-Pulido G, Gonzalez-Rivero M, et al, Great Barrier Reef Marine Park Authority Townsville, 2020, ISBN 9780648589211

Supplementary report to the final report of the coral reef expert group: S6. Novel technologies in coral reef monitoring Gonzalez-Rivero M, Roelfsema C, Lopez-Marcano S, Castro-Sanguino C, Bridge T, Babcock R, Great Barrier Reef Marine Park Authority Townsville, 2020, ISBN 9780648721406

A contemporary baseline record of the world’s coral reefs Alberto Rodriguez-Ramirez, Manuel González-Rivero, Oscar Beijbom, Christophe Bailhache, Pim Bongaerts, Kristen T. Brown, Dominic E. P. Bryant, Peter Dalton, Sophie Dove, Anjani Ganase, Emma V. Kennedy, Catherine J. S. Kim, Sebastian Lopez-Marcano, Benjamin P. Neal, Veronica Z. Radice, Julie Vercelloni, Hawthorne L. Beyer & Ove Hoegh-Guldberg, Scientific Data, 2020, DOI 10.1038/s41597-020-00698-6

Biogeochemical variability and trophic status of reef water column following a coral bleaching event Radice VZ, Fry B, Dove S, and O Hoegh-Guldberg, Coral Reefs, 2020, DOI 10.1007/s00338-020-02021-6

Evolutionary biogeography of the reef-building coral genus Galaxea across the Indo-Pacific ocean Wepfer PH, Nakajima Y, Sutthacheep M, Radice VZ, Ang P, Terraneo T, Richards Z, Sudek M, Fujimura A, Toonen R, Mikheyev AS, Economo EP, and S Mitarai, Molecular Phylogenetics and Evolution, 2020, DOI 10.1016/j.ympev.2020.106905

Coral Reef Community Changes in Karimunjawa National Park, Indonesia: Assessing the Efficacy of Management in the Face of Local and Global Stressors Kennedy EV, Vercelloni J, Neal BP, Ambariyanto, Bryant DE, Ganase A, Gartrell P, Brown K, Kim CJ, Hudatwi M, Hadi A, Prabowo A, Prihatinningsih P, Haryanta S, Markey K, Green S, Dalton P, Lopez-Marcano S, Rodriguez-Ramirez A Gonzalez-Rivero, M.; Hoegh-Guldberg, O, Journal of Marine Science and Engineering, 2020, DOI 10.3390/jmse8100760

Morphological stasis masks ecologically divergent coral species on tropical reefs Pim Bongaerts, Ira R. Cooke, Hua Ying, Mark A. Ragan, Madeleine J.H. van Oppen, Ove Hoegh-Guldberg. Published:April 02, 2021 DOI 10.1016/j.cub.2021.03.028

The Catlin Seaview Survey: a high-resolution seabed imaging system mobilised to quantify the distribution and spatial structure of marine habitat in Sydney Harbour Griffin K, Hedge LH, González-Rivero M, Hoegh-Guldberg O, Johnston EL, Australian Marine Sciences Association Conference, 2014

Integrating novel approaches to gain knowledge on coral reef seascape ecology using underwater imagery Manuel Gonzalez-Rivero, Marine Imaging Workshop, 2014

Exploring coral-associated bacteria over an extreme depth gradient: assessing the presence of ubiquitous symbionts Alejandra Hernandez, 13th ICRS, 2016

Environmental drivers of broad-scale distribution of sponge communities on the Mesoamerican Barrier Reef Anjani Ganse, 13th ICRS, 2016

The XL Catlin Seaview Survey: Measuring bleaching and community response in Hawaii in 2015 with high-definition imaging and semi-automated image processing Ben Neal, 13th ICRS, 2016

Coral health and disease in Timor-Leste Catherine Kim, 13th ICRS, 2016

Partitioning the effects of structural complexity on the intra-habitat distribution of coral reef fishes Manuel Gonzalez-Rivero, 13th ICRS, 2016

Deep learning in the shallow seas: using collaborative platforms and deep neural networks to greatly advance automated analysis of coral reef survey imagery Oscar Beijbom, 13th ICRS, 2016

Climate Change and the Great Barrier Reef Ove Hoegh-Guldberg, Qantas Employee Association, 2016

Climate change, Paris, coastal planning and what just happened last week Ove Hoegh-Guldberg, Keeble Lecture: Planning Institute of Australia, Brisbane, 2016

COP21+1: The Paris climate change agreement, one year on: transition to low carbon economy, where does Australia stand? Ove Hoegh-Guldberg, French Australian Chamber of Commerce, 2016

Emptying the treasure chest: The Great Barrier Reef, Biomimetics and Climate Change Ove Hoegh-Guldberg, Invited plenary: International Mesostructured Materials Symposium, Brisbane Convention Centre, 2016

Grappling with a changing ocean: Coral reefs, people and COP21 (Paris) agreement Ove Hoegh-Guldberg, Invited talk, Bremen Earth and Social Science (BEST) talks: Bremen

Introduction to public forum: Marine science and climate change: an Indonesian and Australian perspective Ove Hoegh-Guldberg, 2016

Meeting the challenges of change: The Great Barrier Reef Marine science and climate change Ove Hoegh-Guldberg, Australian-Indonesian Science Symposium, Aust Academy of Science, Canberra, 2016

Oceans and climate change: Crunch time for coral reefs? Ove Hoegh-Guldberg, Kathryn Fuller Plenary Lecture. WWF, Washington DC, 2016

Opening plenary: The Ocean, People and Ecosystem Health: Challenges and solutions in a changing world Ove Hoegh-Guldberg, One Health Congress & The 6th Biennial Conference of the International Association for Ecology and Health, 2016

Plenary lecture, Scoping Meeting for the IPCC Special Report on Climate Change and Oceans and the Cryosphere Ove Hoegh-Guldberg, 2016

Restoring the ocean economy: meeting the challenge of global change Ove Hoegh-Guldberg, Invited lecture: Business School, University of Jakarta, 2016

Risk and resilience: COP21, coral reefs and the next few decades Ove Hoegh-Guldberg, 13th ICRS, 2016

Rough seas ahead? Oceans, coasts and climate change Ove Hoegh-Guldberg, Invited lecture: Australian Embassy, Jakarta, 2016

Temporal patterns of coral cover on the far northern Great Barrier Reef in response to mass bleaching stress and strong cyclones Ove Hoegh-Guldberg, Presentation to Dept of Energy and the Environment, Canberra, 2016

Mesophotic corals of North East Australia: Initial estimates of the potential for deep-refuge Paul Muir, 13th ICRS, 2016

Enhancing the acquisition of data for reef science and management Rodriguez-Ramirez A, et al, 13th ICRS, 2016

The influence of upwelling on the trophic status of corals from shallow and deep reef slopes from the Maldives Veronica Radice, 13th ICRS, 2016

Stable isotopes indicate role of upwelling and coral heterotrophic feeding following mass bleaching in remote coral reefs of Maldives, Indian Ocean Veronica Radice, AMSA, 2018

Plenary session: Indonesia’s coral reefs Emma Kennedy, Indonesia in an era of global change 2018 symposium, 2018

Understanding how Indonesia's coral reefs were affected by the recent global underwater heatwave in 2014-2017 Kennedy EV, Hoegh-Guldberg O, Indonesia in an era-of Global Change, Joint Indonesia-University of Queensland Conference, 2018

Linking impacts of cyclone-generated waves to fine-scale changes in reef community structure Carolina Castro-Sanguino, ACRS, 2018

The cumulative stress was a major driver of recent coral mortality on the Great Barrier Reef Julie Vercelloni, International Statistical Ecology Conference, 2018

Shifts in trophic strategies of reef-building corals following a seawater temperature anomaly Veronica Radice, 11th International Conference on the Applications of Stable Isotope Techniques to Ecological Studies, 2018

Trophic ecology of shallow and deep symbiotic reef-building corals in the central Indian Ocean Veronica Radice, Invited talk: The Academy of Natural Sciences of Philadelphia, 2018

Securing a long term future for Coral Reefs Kennedy EV, Beyer H, Hoegh-Guldberg O, Ecological Society of Australia 2018 Conference, 2018

Fatty acid biomarkers: trophic strategies of reef-building corals Veronica Radice, 92nd Australian Coral Reef Society (ACRS) Conference, 2019

CONFERENCE

ABSTRACTS & RESEARCH

PRESENTATIONS

BOOKS

Mesophotic Coral Ecosystems Loya Y, Puglise K, Bridge TCL, Springer, 2019, ISBN 3319927353

ARTICLES